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Fish covered in tooth-like armour could help reveal how teeth evolved

New Scientist, 2nd July 2021

Armoured catfish Pterygoplichthys species, photo by the US Geological Survey

A pet fish adorned with tooth-like scales is helping biologists tackle a longstanding debate about the origin of teeth, and explore how body structures can be lost and regained during evolution.

The suckermouth armoured catfish is commonly found in pet shops and, unusually for a bony fish, has tooth-like structures called odontodes covering its skin. These physically resemble teeth, erupting from thickened patches of skin to form layered structures of pulp, dentine and enamel, and similar genes appear to be active in both during development. But which evolved first, and how did tissues gain or regain them?

Their evolutionary history is complicated, because while ancient fish had similar structures, they were lost in most bony fish, but retained in fish with cartilage-based skeletons, like sharks. They re-emerged again independently in four different bony fish groups, including armoured catfish.

To find out more, biologists needed the ability to study and manipulate genes in a fish with skin odontodes, but zebrafish, a common model animal for these kinds of experiments, don’t have them.

Now Shunsuke Mori and Tetsuya Nakamura at Rutgers, the State University of New Jersey, have analysed gene activity in developing suckermouth armoured catfish skin odontodes. They uncovered a network of genes very similar to those found in developing teeth. “Most of the genes are shared,” says Nakamura.

One of these genes, pitx2, is needed for the first steps of tooth development, yet is absent from the skin odontodes of sharks. So Mori and Nakamura used gene silencing techniques to reduce the activity of pitx2 in the catfish and found that the odontodes didn’t develop properly…

Read more: https://www.newscientist.com/article/2282752-fish-covered-in-tooth-like-armour-could-help-reveal-how-teeth-evolved/

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Mini-heart grown in the lab can pump fluid

New Scientist, 1 July 2021

Stem cells have been used to grow an embryonic-like “heart” that can pump fluid around a system of tiny channels on a laboratory slide.

The mini-heart could allow researchers to explore how physical forces, such as blood flow, shape the early stages of human heart development and give new insights into congenital heart defects.

Current efforts to grow human heart tissue involve coaxing human stem cells to form spheres of heart tissue, known as organoids, in a lab dish. While these offer invaluable insights, they don’t accurately mimic the shape of the heart, which, in the earliest stages of its development, looks like a simple, straight tube.

“If we really want to model organ function, we need to figure out how to make these things in the form of tubes,” says David Sachs at the Icahn School of Medicine at Mount Sinai.

Sachs and his colleagues seeded human stem cells, known as induced pluripotent stem cells, onto a plastic plate containing tiny wells connected by hair-thin channels. By applying different combinations of chemical signals to different areas of the plate, they were able to get the cells to form tubes made of human heart muscle.

The heart tubes pumped fluid around the channels, Sachs told the International Society for Stem Cell Research’s 2021 meeting, held virtually last week…

Read more: https://www.newscientist.com/article/2282548-mini-heart-grown-in-the-lab-can-pump-fluid-just-like-the-real-thing/

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Embryos reverse ageing to become younger than when they first formed

New Scientist, 22nd March 2021

Dr Elena Kontogianni, CC0, via Wikimedia Commons

A developing embryo reverses signs of ageing and appears younger than the fertilised egg from which it arose. The finding suggests that embryos are able to rejuvenate, which could lead to ways of reversing age-related diseases.

One of life’s great mysteries is how aged parents produce youthful offspring. Our cells show signs of age as a result of the accumulation of damage wrought by the environment and the body’s metabolism, and yet the eggs or sperm that our bodies make can combine to produce a baby biologically younger than its parents.

This has led biologists to suggest that the germline, the cells that give rise to eggs and sperm and which carry genes down successive generations, are immune to ageing. But recent research shows that not only does the germline age, but that ageing starts even as embryos develop in the uterus, much sooner than we thought.

“Then the question is, if ageing begins earlier, when does it actually begin?” says Vadim Gladyshev at Brigham and Women’s Hospital in Boston.

Age-related damage manifests as changes to patterns of chemical marks – known as methylation – on the DNA in the genomes of cells. These “epigenetic clocks” correlate…

Read more: https://www.newscientist.com/article/2272022-embryos-reverse-ageing-to-become-younger-than-when-they-first-formed/

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Electricity helps fish take flight

New Scientist, 16th March 2021

https://collections.carli.illinois.edu/cdm/singleitem/collection/nby_teich/id/428968

FLYING fish may have taken to the air when evolution tweaked electrical signals that control the size of their fins. This discovery suggests the existence of a previously unknown mechanism by which animals can change the relative size of specific body parts.

“How organs and tissues know when to stop growing at a certain size and stay there is a major mystery,” says Jake Daane at Northeastern University in Massachusetts. This scaling, known as allometry, is also a key driver of evolutionary change. The stunning variation in the fins of bony fish are a classic example, from the billowing veils of the tropical betta fish to the stumpy appendages of a mackerel.

Most dramatic of all are the wings of flying fish, which allow some species to leap from the sea and glide for 400 metres, the length of eight Olympic swimming pools. This helps fish evade underwater predators, a tactic so successful that it has evolved independently several times.

In comparisons of the genomes of nine species of flying fish and some non-flying relatives, Daane and his colleagues spotted genetic changes consistently associated with gliding, and uncovered sections of the genome being conserved by natural selection…

Read more: https://www.newscientist.com/article/2271377-altered-bioelectric-genes-give-zebrafish-wings-like-flying-fish/

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Placenta is full of mutated cells dumped by embryo

New Scientist, 22nd March 2021

Doc. RNDr. Josef Reischig, CSc., CC BY-SA 3.0 https://creativecommons.org/licenses/by-sa/3.0, via Wikimedia Commons

THE human placenta is riddled with cancer-like patterns of mutations. But the discovery is better news than it might appear: it is helping scientists open a new window on the mysterious world of early human development.

In some ways, the placenta is a forgotten organ. It begins to form shortly after fertilisation from the embryo’s cells and then helps to support the future fetus as it develops before being discarded at birth.

But it is difficult to study how embryos “decide” which cells are destined for the placenta and which for the fetus.

“So far, we’ve been blind to the first split,” says Tim Coorens at the Wellcome Sanger Institute near Cambridge, UK.

Coorens and his colleagues, including his PhD supervisor Sam Behjati, decided to retrace the lineages of cells in full-term placentas to see where they came from.

Their approach relies on the fact that cells naturally accumulate mutations in their DNA and then pass these on when they divide. By comparing patterns of mutations between samples, it is possible to trace cells’ family trees back in time…

Read more: https://www.newscientist.com/article/2272022-embryos-reverse-ageing-to-become-younger-than-when-they-first-formed/

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The call of alcohol

Some people get great pleasure from boozing while others can take or leave a drink. We ‘re beginning to work out why,  says Claire Ainsworth

New Scientist, 12th December 2020

 Image by motointermedia from Pixabay

LARS IGUM RASMUSSEN and his mates were going large. Donning their lederhosen, the three middle-aged men headed into Oktoberfest in Munich, Germany, the world’s biggest folk and beer festival. There, each proceeded to quaff an average of 7.5 litres of beer a day, for three days. It was a spectacular bender.

Getting hammered wasn’t the main aim of the exercise, however: Rasmussen is health correspondent for Danish magazine Politiken and was writing a story exploring the physiological effects of binge drinking. To understand what was happening to him and his friends, he had enlisted the help of metabolic physiologist Filip Knop at the University of Copenhagen. While Rasmussen was interested in finding out what havoc excessive boozing wreaks on the bodies of middle-aged men, Knop had another motive for getting involved. He and his colleague Matt Gillum had been itching to test a new idea about people’s appetite for alcohol – but couldn’t, in good conscience, solicit anyone to partake in a binge of this magnitude. “It would give the ethics officer a heart attack,” says Gillum. Volunteers, however, were a different matter.

What Knop and Gillum discovered is helping to build a picture of how our bodies control our boozing habits, from the amount we drink to when we stop. The research is homing in on a hormone that partly explains the huge variation in our social drinking habits: why some people are teetotal or can’t drink much, while others are lushes. It also points to the startling idea that our livers have more say in directing our behaviour than anyone imagined.

Of course, people choose to …

Read more: https://www.newscientist.com/article/mg24833122-300-why-people-enjoy-alcohol-or-are-teetotal-may-come-down-to-a-hormone/

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When creepy-crawlies hit the gym

Getting invertebrates to work out in the lab could have surprising benefits for human health

New Scientist, 16th December 2020

Sanjay Acharya, CC BY-SA 4.0 https://creativecommons.org/licenses/by-sa/4.0, via Wikimedia Commons

RUN run run run run THUD run run run run run THUD. This is the steady beat of the Power Tower as it subjects a cohort of athletes to extreme fitness training. Each round starts with a vertical sprint up a smooth wall, before a jolt from the machine sends them tumbling to the bottom again. Hour after hour, hundreds are put through their paces. And wow, do they get results: stronger hearts, faster climbs, greater endurance and a metabolism wired to resist stress. Not bad for a small fly you would usually find haunting bananas or floating face down in your glass of Shiraz.

Fruit flies aren’t the first thing that springs to mind when you think of fitness training, but they are providing a surprising window on the biology of exercise. They aren’t even the strangest invertebrate hitting the gym. That medal goes to a tiny nematode worm called Caenorhabditis elegans whose transparent body allows scientists to see the physical consequences of activity in action.

But there’s a problem. You can’t just plonk these creatures in front of a workout video and tell them to feel the burn. So how do you get a fly to drop and give you 20 or a worm to run a marathon? Like any good personal trainer, you understand your client’s motivations and craft your workout accordingly. That’s where the Power Tower comes in – along with laser treadmills, electrified swimming pools and other unusual gym equipment. It isn’t just the invertebrates that benefit either. This fiendish research is generating unique insights into how exercise affects human health and ageing …

Read more: https://www.newscientist.com/article/mg24833133-000-why-fitness-training-for-worms-and-flies-could-make-humans-healthier/

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Rare diseases band together toward change in research

Patients with rare diseases, and the scientists who study those diseases, were long inhibited by geographic sparsity. But the social-media age has made it much easier for them to band together to leverage their experience and push forward change.

“There were 150 people in one room at the same time suddenly being able to share. And that was so powerful.” Jillian Hastings Ward recalls attending the first conference, in September 2019, involving scientists, clinicians and the parents of children with a group of rare genetic neurological conditions called ‘GRIN disorders’. There are probably just a few hundred people in total worldwide with GRIN disorders, which means research into their conditions is scarce and there is no cure.

The conference is part of a drive involving the CureGRIN Foundation, a GRIN patient advocacy and patient-led research network, that aims to change that. For Hastings Ward, who is a member of CureGRIN’s board and whose six-year-old son Sam has a GRIN disorder, it felt like a real turning point. “It was really moving to see that many people get together, and the energy it generated in the room was fantastic,” she says. “That ability that we have to help them prioritise, do further research, is something that I’m quite hopeful about in the future.”

This idea of patients coordinating and driving the direction and pace of research is the raison d’être of a growing rare-disease patient movement that aims to transform the relationships among patients, scientists, clinicians and the pharmaceutical industry and thus bring treatments to the clinic much faster than would otherwise be possible.

Patients and their families are forming communities that go beyond patient support and advocacy, and they are actively networking scientists and clinicians together, building medical registries, deciding on research priorities, identifying scientists to work on these priorities and raising funds to support them.

This emerging role of patients as builders of new research-enabling infrastructures represents a shift away from the traditional narrative, in which patients are simply recipients of the fruits of medical research, toward one in which they are active, equal partners in its coordination, design and execution…

Read more: Nature 07 October 2020: https://www.nature.com/articles/s41591-020-1098-7

Image: Pixabay

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Fantastic beasts

Creatures with incredible superpowers including the ability to survive being frozen and suffocated and resist ageing could revolutionise medicine, space travel and even war

IT HAS been holding its breath for months. Locked under an airless seal of ice, the extraordinary animal waits. At last, the warmth of spring brings relief. Claws twitch, a brain rouses and a beak pushes through the lake’s thawing slush to take a lungful of air. Incredibly, the western painted turtle is none the worse for having endured the kind of oxygen starvation that would normally kill a human in minutes.

At more than 100 days, the turtle holds the record among four-legged animals for surviving without oxygen. It is by no means the only creature to boast jaw-dropping talents. The constellation of powers found across the animal kingdom seems fantastical: the ability to almost completely regenerate innards, to dodge ageing or cancer, to slumber immobile for months without bone or muscle wasting, to slow biological time or even enter a state of suspended animation that can withstand all manner of trials, from freezing to bombardment with gamma rays.

Almost as implausible-sounding is the idea that humans might be able to borrow some of these abilities. Yet the discovery that these powers are underpinned by genes and biological processes we too possess makes this a distinct possibility. Some potential applications – such as putting people into a sort of hibernation for space travel – remain distant goals. But others – including keeping transplant organs fresh without cooling and developing new tactics to tackle cancer and ageing – seem feasible. In fact, the US has launched a research project to exploit animal powers that could help injured soldiers on the battlefield (see “Stop the clock”).

Read more: https://www.newscientist.com/article/mg24432510-500-want-to-regrow-organs-and-defy-cancer-just-copy-these-awesome-animals/#ixzz66fUIdOgP

Image: Karunakar Rayker from India [CC BY 2.0], via Wikimedia Commons

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Penguin archaeology

It’s amazing what you can discover about a penguin when you rummage through its waste, finds Claire Ainsworth

AS EUREKA moments go, it wasn’t the most dignified. David Lambert lost his footing and face-planted into a patch of expired penguins. He had been taking blood samples from living birds at a nesting site, but as he scrambled to his feet, it dawned on him that he was standing on a mass grave. “In those penguin colonies you are literally walking on matted bodies,” he says. “When you scratch around, you just find bones after bones after bones.”

Lambert’s insight was to realise that he had stumbled on a deep-frozen archive. The remains belonged to Adélie penguins, which return to the same spots to nest year after year, often for centuries. And this was Antarctica, the coldest, driest place on the planet, offering the ideal conditions for preserving DNA. By digging into this repository, he could unearth the story of Adélies and their evolution.

That’s not all. This frozen treasure trove has the potential to give new insights into the past, present and future of the Antarctic, too. This promise is what’s drawing scientists like Lambert to the bottom of the world, braving seat-of-your-pants helicopter rides and vicious polar storms to sift through layers of mummified penguin bodies and reeking semi-fossilised bird faeces. And what they are finding has exceeded expectations. The preserved Adélie remains are providing clues about past climate conditions, changes in ice shelves and sea ice, the impact of historical human activities such as whaling, and even the mechanism of evolution itself. Not bad for a short, stout bird with a reputation for belligerent curiosity.

Read more: https://www.newscientist.com/article/mg24032093-700-the-mummified-penguins-that-hold-the-secrets-of-antarcticas-past/#ixzz66fQu6RO9

Image: Jerzy Strzelecki [CC BY 3.0 (https://creativecommons.org/licenses/by/3.0)]